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Knowledge Management Center for Illuminating the Druggable Genome

Dac-Trung Nguyen
Division of Pre-Clinical Innovation
Informatics
National Center for Advancing Translational Sciences
National Institutes of Health

Contacts

Pharos: @idg_pharos

Overview

As a partner with the KMC, NCATS is developing and implementing PHAROS as the User Interface Portal to access all the integrated data, metadata and annotation collected into TCRD and via tools from ISMMS. Queries across all human proteins can be carried out based on Target Development Levels stages of knowledge for protein targets from most known Tclin to least known Tdark , tissue expression, chemical tools, Novelty score, etc.

NIH grant number: 1U24 CA224370-01




KMC-NCATS publications:

  1. Pharos: Collating protein information to shed light on the druggable genome. Nguyen DT, Mathias S, Bologa C, Brunak S, Fernandez N, Gaulton A, Hersey A, Holmes J, Jensen LJ, Karlsson A, Liu G, Ma'ayan A, Mandava G, Mani S, Mehta S, Overington J, Patel J, Rouillard AD, Schürer S, Sheils T, Simeonov A, Sklar LA, Southall N, Ursu O, Vidovic D, Waller A, Yang J, Jadhav A, Oprea TI, Guha R. Nucleic Acids Res. 2017 Jan 4;45(D1):D995-D1002. doi: 10.1093/nar/gkw1072. Epub 2016 Nov 29. PMID: 27903890, PMCID: PMC5210555  

  2. Drug target ontology to classify and integrate drug discovery data. Lin Y, Mehta S, Küçük-McGinty H, Turner JP, Vidovic D, Forlin M, Koleti A, Nguyen DT, Jensen LJ, Guha R, Mathias SL, Ursu O, Stathias V, Duan J, Nabizadeh N, Chung C, Mader C, Visser U, Yang JJ, Bologa CG, Oprea TI, Schürer SC. J Biomed Semantics. 2017 Nov 9;8(1):50. doi: 10.1186/s13326-017-0161-x. PMID: 29122012, PMCID: PMC5679337